Cereal Genomics II by Pushpendra K. Gupta, Rajeev Varshney

By Pushpendra K. Gupta, Rajeev Varshney

“Cereal Genomics” released in 2004 served the aim of amassing all info on cereal genomics at one position and was once good obtained by means of the cereal staff through-out the area. The final 8 years have witnessed major development within the box of cereal genomics. for example, high-density genetic maps, actual maps, QTL maps or even draft genome series became on hand for numerous cereal species. additionally, the following iteration sequencing (NGS) applied sciences have revolutionized genomics examine, in order that it's attainable now to series genomes of countless numbers or millions of accessions of somebody cereal crop. a great deal of information generated utilizing those NGS applied sciences created a requirement for computational instruments to examine this large information. In view of those advancements, the Editors realised that there has been a necessity to have an up-to-date quantity at the current prestige and destiny customers of cereal genomics. those advancements with regards to know-how and the instruments were documented during this quantity, hence supplementing our previous edited quantity “Cereal Genomics”. “Cereal Genomics II” discusses advances in cereal genomics learn made over the past 8 years, and provides state-of-art cereal genomics and its usage concerning either simple study reminiscent of comparative genomics and useful genomics, and utilized learn like QTL mapping and molecular breeding.

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2011) An integrated map spanning 1,346 cM was constructed using 1,443 molecular markers, including 1,155 SNPs. A 100-fold difference in recombination frequency was observed between different chromosomal regions 1,006 polymorphic SNPs grouped 80 lines in 6 subgroups. Pairwise LD and association map- Hao et al. (2011) ping with phenotypic traits investigated under water-stressed and well-watered conditions showed rapid LD decline within 100–500 kb Joint-linkage mapping and GWAS revealed that kernel composition traits are controlled by Cook et al.

2009) Rostocks et al. (2006) Evaluated variation between various rice species/subspecies: indica and japonica, indica and aus, US tropical japonica, indica and O. rufipogon, japonica and O. rufipogon Tung et al. (2010) Evaluate diversity within and between sub-populations of O. sativa Chen et al. (2011) 372 SNPs unraveled the indica–japonica subspecific differentiation and geographic differentiations within Indica and Japonica in 300 rice inbred lines Evaluate diversity within and between O. sativa, O.

Nucl Acids Res 35:2936–2943 Bilgic H, Cho S, Garvin DF, Muehlbauer GJ (2007) Mapping barley genes to chromosome arms by transcript profiling of wheat-barley ditelosomic chromosome addition lines. Genome 50:898–906 Bolibok-Bra˛goszewska H, Heller-Uszyn´ska K, Wenzl P, Uszyn´ski G, Kilian A, RakoczyTrojanowska M (2009) DArT markers for the rye genome: genetic diversity and mapping. BMC Genomics 10:578 Bonman JM, Gu Y, Coleman-Derr D, Jackson EW, Bockelman HE (2011) Inferring geographic origin of barley (Hordeum vulgare L.

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